Here is a list of all documented files with brief descriptions:

CCD47Ctrl.cpp	Definitions for the VisAO CCD47 controller
CCD47Ctrl.h	Declarations for the VisAO CCD47 controller
CCD47Ctrl_main.cpp	The main program for the VisAO CCD47 controller
coronguide.cpp
coronguide.h	Definitions for a class to auto guide for the coronagraph
coronguide_main.cpp	The main program for the Coronagraph Guider
dioserver.cpp	Definitions for the dioserver
dioserver.h	Declarations for the dioserver
dioserver_main.cpp	The main program for the digital I/O server
ebtables_u.h
EDTutils.c	Definitions for some utility functions pertaining to the EDT framegrabber PCI card
EDTutils.h	Declarations for some utility functions pertaining to the EDT framegrabber PCI card
ESPMotorCtrl.cpp
ESPMotorCtrl.h	Declarations for a Newport ESP motor controller
ethernetdb.h
fifoutils.c	Definitions for linux fifo utilities
fifoutils.h	Declarations for linux fifo utilities
FilterWheelLocal.cpp	Declarations for the FilterWheelLocal class
FilterWheelLocal.h	Declarations for the FilterWheelLocal class, which interfaces with the VisAOSimpleMotorCtrl class via the MsgD
FilterWheelLocal_main.cpp	Contains the main program for the filter wheel controller
fir_filter.cpp	FIR digital filter class definitions
fir_filter.h	FIR digital filter class declarations
FocusMotorCtrl.cpp	Definitions for the focus stage stepper motor controller
FocusMotorCtrl.h	Declarations for the focus stage stepper motor controller
FocusMotorCtrl_main.cpp	The main program for the focus stage controller
focusops.py
framegrabber.h	Declarations and definitions for a template class to manage a generic framegrabber
framegrabber39.cpp	Definitions for a class to capture frames from the BCU39, using the ebtables ulog
framegrabber39.h	Declarations for a class to capture frames from the BCU39, using the ebtables ulog
framegrabber39_main.cpp	The main program for the CCD39 frame grabber
framegrabber47.cpp	Definitions for a class to manage the EDT PCI framegrabber for the CCD47
framegrabber47.h	Declarations for a class to manage the EDT PCI framegrabber for the CCD47
framegrabber47_main.cpp	The main program for the CCD47 frame grabber
frameselector.cpp	Definitions for the real time frame selector
frameselector.h	Declarations for the real time frame selector
frameselector_main.cpp	The main program for the frame selector
frameserver.cpp	Definitions for a class for serving frames over UDP
frameserver.h	Declarations for a class for serving frames over UDP
frameserver_main.cpp	The main program for the frame server
framewriter.h	Declarations for a class for writing image frames from shared memory to disk
framewriter_main.cpp	The main program for the frame writer
framewriterUC_main.cpp
getethertype.c
GimbalCtrl_main.cpp	The main program for the gimbal controller
GimbalMotorCtrl.cpp
GimbalMotorCtrl.h	Definitions for the gimbal motor controller
gimbalops.py
gpurecon.h
improcessing.cpp
improcessing.h
libvisao.h	VisAO software utilitites, declarations
libvisaoc.c	VisAO software utilitites, definitions in c
libvisaocpp.cpp	VisAO software utilitites, definitions (c++)
profiler.cpp
profiler.h
profileutils.c
profileutils.h
PwrMon.cpp
PwrMon.h	Declarations for the VisAOPwrMon class
PwrMon_main.cpp	Contains the main program for the power monitor
QTITempProbe.cpp
QTITempProbe.h
readcolumns.cpp
readcolumns.h
recmat.cpp	Definitions for a class to manage a reconstructor matrix
recmat.h	Declarations for a class to manage a reconstructor matrix
Reconstruct.cpp
reconstructor.cpp	Definitions for a class to perform real-time reconstruction of wavefronts
reconstructor.h	Declarations for a class to perform real-time reconstruction of wavefronts
reconstructor_main.cpp	Main program for the reconstructor
rmsAccumulator.cpp
rmsAccumulator.h
sharedim_stack.cpp	Definitions for the shared image circular buffer
sharedim_stack.h	Declarations for the shared image circular buffer
ShutterControl.cpp	Definitions for a generic shutter controller
ShutterControl.h	Declarations for a generic shutter controller
ShutterControl_main.cpp	Main program for shutter control
ShutterControlDioclient.cpp	Definitions for the shutter controller as a client of the dioserver
ShutterControlDioclient.h	Declarations for the shutter controller as a client of the dioserver
ShutterRemoteControl.cpp	Definitions for shutter control from the AO Supervisor
ShutterRemoteControl.h	Declarations for shutter control from the AO Supervisor
ShutterRemoteControl_main.cpp	Main program for shutter control from the AO Supervisor
statusboard.h	Declarations for the VisAO status information structures
svbksb.cpp
svbksb.h
sysmonD.cpp	Definitions for the sysmonD system monitor
sysmonD.h	Declarations for the sysmonD system monitor
sysmonD_main.cpp	The main program for the VisAO system monitor
visao.py	The visao python module provides a python intervace to the VisAO camera
VisAO_main.h	The main program for a VisAO application
VisAOApp_base.cpp	Definitions for VisAOApp_base
VisAOApp_base.h	Declarations for VisAOApp_base
VisAOApp_standalone.cpp	Definitions for the standalone VisAO application
VisAOApp_standalone.h	Declarations for the standalone VisAO application
visaodevices.py	The visaodevices python module provides interfaces to all of the scriptable VisAO processes
visaofifos.py	The visaofifos python module provides the basic interface to a VisAO FIFO device
VisAOIClient.cpp
VisAOIClient.h
VisAOIClient_main.cpp	Main program for VisAOI system MagAOIClient
visaoimutils.cpp	Definitions for various image utility functions
visaoimutils.h	Declarations for various image utility functions
VisAOJoeCtrl.cpp	Definitions for CCD47 control from the AO Supervisor
VisAOJoeCtrl.h	Declarations for CCD47 control from the AO Supervisor
VisAOJoeCtrl_main.cpp	Main program for CCD47 control from the AO Supervisor
VisAOSimpleMotorCtrl.cpp	Declarations for the VisAOSimpleMotorCtrl class
VisAOSimpleMotorCtrl.h	Declarations for the VisAOSimpleMotorCtrl class
VisAOSimpleMotorCtrl_main.cpp	Contains the main program for the filter wheel controller
visaoutils.py	Various utilities for use in VisAOScript
WollastonStatus.cpp	Definitions for the VisAO wollaston lift status maintainer
WollastonStatus.h	Declarations for the VisAO wollaston lift status maintainer
WollastonStatus_main.cpp	Main program for the VisAO wollaston lift status maintainer